WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F47A4.5.1 Sequence Name  F47A4.5.1
Length (nt)  3653   Chromosome Location  X: 9833352-9838039
Chromosome . Primary Identifier  X Chromosome Location . Start  9833352
Chromosome Location . End  9838039 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F47A4.5.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00009801 ipla-2 F47A4.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F47A4.5 F47A4.5 3216   X: 9833783-9833944

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F47A4.5.1 9833352 9838039 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon247213   593   X: 9833352-9833944 Caenorhabditis elegans
Exon247214   1060   X: 9834065-9835124 Caenorhabditis elegans
Exon247215   92   X: 9835173-9835264 Caenorhabditis elegans
Exon247216   129   X: 9835319-9835447 Caenorhabditis elegans
Exon247217   393   X: 9835591-9835983 Caenorhabditis elegans
Exon247218   175   X: 9836032-9836206 Caenorhabditis elegans
Exon247219   609   X: 9836284-9836892 Caenorhabditis elegans
Exon247220   196   X: 9836965-9837160 Caenorhabditis elegans
Exon247221   224   X: 9837504-9837727 Caenorhabditis elegans
Exon247222   97   X: 9837794-9837890 Caenorhabditis elegans
Exon247223   85   X: 9837955-9838039 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F47A4.5.1 9833352 9838039 -1

1 Sequence

Length
3653

1 Sequence Ontology Term

Identifier Name Description
transcript