WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:VZC374L.1a.1 Sequence Name  VZC374L.1a.1
Length (nt)  1373   Chromosome Location  X: 10031150-10033284
Chromosome . Primary Identifier  X Chromosome Location . Start  10031150
Chromosome Location . End  10033284 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
VZC374L.1a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00012162 sek-6 VZC374L.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:VZC374L.1a VZC374L.1a 1080   X: 10031152-10031270

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:VZC374L.1a.1 10031150 10033284 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon247873   121   X: 10031150-10031270 Caenorhabditis elegans
Exon247875   160   X: 10031364-10031523 Caenorhabditis elegans
Exon247877   117   X: 10031571-10031687 Caenorhabditis elegans
Exon247879   120   X: 10031851-10031970 Caenorhabditis elegans
Exon247881   180   X: 10032023-10032202 Caenorhabditis elegans
Exon247883   69   X: 10032247-10032315 Caenorhabditis elegans
Exon247885   66   X: 10032367-10032432 Caenorhabditis elegans
Exon247887   86   X: 10032481-10032566 Caenorhabditis elegans
Exon247889   66   X: 10032612-10032677 Caenorhabditis elegans
Exon247891   388   X: 10032897-10033284 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:VZC374L.1a.1 10031150 10033284 1

1 Sequence

Length
1373

1 Sequence Ontology Term

Identifier Name Description
transcript