WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y49A10A.1.1 Sequence Name  Y49A10A.1.1
Length (nt)  1530   Chromosome Location  X: 10358383-10360550
Chromosome . Primary Identifier  X Chromosome Location . Start  10358383
Chromosome Location . End  10360550 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y49A10A.1.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00013028 efhc-1 Y49A10A.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y49A10A.1 Y49A10A.1 1344   X: 10358494-10358684

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y49A10A.1.1 10358383 10360550 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon248674   302   X: 10358383-10358684 Caenorhabditis elegans
Exon248675   187   X: 10358915-10359101 Caenorhabditis elegans
Exon248676   144   X: 10359150-10359293 Caenorhabditis elegans
Exon248677   114   X: 10359339-10359452 Caenorhabditis elegans
Exon248678   98   X: 10359496-10359593 Caenorhabditis elegans
Exon248679   110   X: 10359637-10359746 Caenorhabditis elegans
Exon248680   161   X: 10359793-10359953 Caenorhabditis elegans
Exon248681   72   X: 10360044-10360115 Caenorhabditis elegans
Exon248682   146   X: 10360165-10360310 Caenorhabditis elegans
Exon248683   196   X: 10360355-10360550 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y49A10A.1.1 10358383 10360550 1

1 Sequence

Length
1530

1 Sequence Ontology Term

Identifier Name Description
transcript