WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F46F6.2b.1 Sequence Name  F46F6.2b.1
Length (nt)  4193   Chromosome Location  X: 10397243-10402573
Chromosome . Primary Identifier  X Chromosome Location . Start  10397243
Chromosome Location . End  10402573 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F46F6.2b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00009793 pkn-1 F46F6.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F46F6.2b F46F6.2b 3396   X: 10397396-10397874

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F46F6.2b.1 10397243 10402573 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon248850   632   X: 10397243-10397874 Caenorhabditis elegans
Exon248852   293   X: 10398133-10398425 Caenorhabditis elegans
Exon248856   923   X: 10398475-10399397 Caenorhabditis elegans
Exon248860   220   X: 10399470-10399689 Caenorhabditis elegans
Exon248864   102   X: 10399741-10399842 Caenorhabditis elegans
Exon248868   125   X: 10400118-10400242 Caenorhabditis elegans
Exon248872   772   X: 10400477-10401248 Caenorhabditis elegans
Exon248876   194   X: 10401300-10401493 Caenorhabditis elegans
Exon248880   147   X: 10401545-10401691 Caenorhabditis elegans
Exon248884   785   X: 10401789-10402573 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F46F6.2b.1 10397243 10402573 1

1 Sequence

Length
4193

1 Sequence Ontology Term

Identifier Name Description
transcript