WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C09D1.1n.1 Sequence Name  C09D1.1n.1
Length (nt)  22086   Chromosome Location  I: 4035893-4090427
Chromosome . Primary Identifier  I Chromosome Location . Start  4035893
Chromosome Location . End  4090427 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C09D1.1n.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006820 unc-89 C09D1.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C09D1.1n C09D1.1n 22086   I: 4035893-4035942

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C09D1.1n.1 4035893 4090427 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

47 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon8360   50   I: 4035893-4035942 Caenorhabditis elegans
Exon8369   274   I: 4036629-4036902 Caenorhabditis elegans
Exon8378   137   I: 4036947-4037083 Caenorhabditis elegans
Exon8387   171   I: 4038490-4038660 Caenorhabditis elegans
Exon8396   163   I: 4038710-4038872 Caenorhabditis elegans
Exon8407   182   I: 4044800-4044981 Caenorhabditis elegans
Exon8416   79   I: 4045025-4045103 Caenorhabditis elegans
Exon8425   221   I: 4045496-4045716 Caenorhabditis elegans
Exon8434   83   I: 4046020-4046102 Caenorhabditis elegans
Exon8448   138   I: 4047250-4047387 Caenorhabditis elegans
Exon8461   111   I: 4047965-4048075 Caenorhabditis elegans
Exon8475   227   I: 4048124-4048350 Caenorhabditis elegans
Exon8489   744   I: 4048906-4049649 Caenorhabditis elegans
Exon8503   69   I: 4049972-4050040 Caenorhabditis elegans
Exon8517   216   I: 4050093-4050308 Caenorhabditis elegans
Exon8531   188   I: 4051955-4052142 Caenorhabditis elegans
Exon8545   484   I: 4052456-4052939 Caenorhabditis elegans
Exon8559   186   I: 4053398-4053583 Caenorhabditis elegans
Exon8567   66   I: 4054476-4054541 Caenorhabditis elegans
Exon8578   1854   I: 4055391-4057244 Caenorhabditis elegans
Exon8593   357   I: 4058536-4058892 Caenorhabditis elegans
Exon8607   1232   I: 4058979-4060210 Caenorhabditis elegans
Exon8621   1861   I: 4060266-4062126 Caenorhabditis elegans
Exon8635   157   I: 4062304-4062460 Caenorhabditis elegans
Exon8660   6065   I: 4064920-4070984 Caenorhabditis elegans
Exon8674   244   I: 4071035-4071278 Caenorhabditis elegans
Exon8688   330   I: 4071333-4071662 Caenorhabditis elegans
Exon8706   104   I: 4073538-4073641 Caenorhabditis elegans
Exon8720   275   I: 4075253-4075527 Caenorhabditis elegans
Exon8734   1085   I: 4075626-4076710 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C09D1.1n.1 4035893 4090427 1

1 Sequence

Length
22086

1 Sequence Ontology Term

Identifier Name Description
transcript