WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F57C7.2a.1 Sequence Name  F57C7.2a.1
Length (nt)  2360   Chromosome Location  X: 10576960-10581034
Chromosome . Primary Identifier  X Chromosome Location . Start  10576960
Chromosome Location . End  10581034 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F57C7.2a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003733 nhx-5 F57C7.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F57C7.2a F57C7.2a 1893   X: 10577129-10577227

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:F57C7.2a.1 10576960 10581034 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

18 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon249409   268   X: 10576960-10577227 Caenorhabditis elegans
Exon249412   142   X: 10577289-10577430 Caenorhabditis elegans
Exon249416   115   X: 10577475-10577589 Caenorhabditis elegans
Exon249420   109   X: 10577751-10577859 Caenorhabditis elegans
Exon249424   155   X: 10577906-10578060 Caenorhabditis elegans
Exon249428   95   X: 10578129-10578223 Caenorhabditis elegans
Exon249432   106   X: 10578276-10578381 Caenorhabditis elegans
Exon249436   89   X: 10578430-10578518 Caenorhabditis elegans
Exon249440   150   X: 10578559-10578708 Caenorhabditis elegans
Exon249444   98   X: 10578964-10579061 Caenorhabditis elegans
Exon249448   105   X: 10579109-10579213 Caenorhabditis elegans
Exon249452   86   X: 10579257-10579342 Caenorhabditis elegans
Exon249456   88   X: 10579463-10579550 Caenorhabditis elegans
Exon249460   92   X: 10579598-10579689 Caenorhabditis elegans
Exon249464   171   X: 10579734-10579904 Caenorhabditis elegans
Exon249468   106   X: 10580132-10580237 Caenorhabditis elegans
Exon249475   40   X: 10580600-10580639 Caenorhabditis elegans
Exon249479   345   X: 10580690-10581034 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:F57C7.2a.1 10576960 10581034 1

1 Sequence

Length
2360

1 Sequence Ontology Term

Identifier Name Description
transcript