WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:M79.1d.1 Sequence Name  M79.1d.1
Length (nt)  4088   Chromosome Location  X: 10605834-10624206
Chromosome . Primary Identifier  X Chromosome Location . Start  10605834
Chromosome Location . End  10624206 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
M79.1d.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000018 abl-1 M79.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:M79.1d M79.1d 3663   X: 10606199-10606337

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:M79.1d.1 10605834 10624206 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

18 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon249603   504   X: 10605834-10606337 Caenorhabditis elegans
Exon249611   84   X: 10606584-10606667 Caenorhabditis elegans
Exon249619   104   X: 10606722-10606825 Caenorhabditis elegans
Exon249628   158   X: 10607258-10607415 Caenorhabditis elegans
Exon249636   490   X: 10608443-10608932 Caenorhabditis elegans
Exon249642   251   X: 10609011-10609261 Caenorhabditis elegans
Exon249649   228   X: 10609310-10609537 Caenorhabditis elegans
Exon249656   578   X: 10609821-10610398 Caenorhabditis elegans
Exon249663   441   X: 10610458-10610898 Caenorhabditis elegans
Exon249670   96   X: 10610950-10611045 Caenorhabditis elegans
Exon249677   344   X: 10611622-10611965 Caenorhabditis elegans
Exon249684   327   X: 10612074-10612400 Caenorhabditis elegans
Exon249693   160   X: 10612599-10612758 Caenorhabditis elegans
Exon249701   74   X: 10616941-10617014 Caenorhabditis elegans
Exon249704   30   X: 10617185-10617214 Caenorhabditis elegans
Exon249707   101   X: 10617782-10617882 Caenorhabditis elegans
Exon249714   56   X: 10623979-10624034 Caenorhabditis elegans
Exon249718   62   X: 10624145-10624206 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:M79.1d.1 10605834 10624206 -1

1 Sequence

Length
4088

1 Sequence Ontology Term

Identifier Name Description
transcript