WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F11A1.3g.1 Sequence Name  F11A1.3g.1
Length (nt)  2245   Chromosome Location  X: 10644409-10665481
Chromosome . Primary Identifier  X Chromosome Location . Start  10644409
Chromosome Location . End  10665481 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F11A1.3g.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000908 daf-12 F11A1.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F11A1.3g F11A1.3g 2214   X: 10644440-10644550

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:F11A1.3g.1 10644409 10665481 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

18 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon249733   142   X: 10644409-10644550 Caenorhabditis elegans
Exon249738   60   X: 10645838-10645897 Caenorhabditis elegans
Exon249754   73   X: 10660796-10660868 Caenorhabditis elegans
Exon249765   83   X: 10661303-10661385 Caenorhabditis elegans
Exon249774   123   X: 10661433-10661555 Caenorhabditis elegans
Exon249783   267   X: 10661601-10661867 Caenorhabditis elegans
Exon249792   48   X: 10661934-10661981 Caenorhabditis elegans
Exon249801   72   X: 10662030-10662101 Caenorhabditis elegans
Exon249810   96   X: 10662795-10662890 Caenorhabditis elegans
Exon249819   75   X: 10663250-10663324 Caenorhabditis elegans
Exon249828   98   X: 10663660-10663757 Caenorhabditis elegans
Exon249834   107   X: 10663807-10663913 Caenorhabditis elegans
Exon249843   197   X: 10663962-10664158 Caenorhabditis elegans
Exon249852   180   X: 10664406-10664585 Caenorhabditis elegans
Exon249863   293   X: 10664630-10664922 Caenorhabditis elegans
Exon249873   162   X: 10664970-10665131 Caenorhabditis elegans
Exon249883   76   X: 10665178-10665253 Caenorhabditis elegans
Exon249887   93   X: 10665389-10665481 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:F11A1.3g.1 10644409 10665481 1

1 Sequence

Length
2245

1 Sequence Ontology Term

Identifier Name Description
transcript