WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F11A1.3e.1 Sequence Name  F11A1.3e.1
Length (nt)  3636   Chromosome Location  X: 10644409-10666872
Chromosome . Primary Identifier  X Chromosome Location . Start  10644409
Chromosome Location . End  10666872 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F11A1.3e.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000908 daf-12 F11A1.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F11A1.3e F11A1.3e 2037   X: 10660802-10660868

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:F11A1.3e.1 10644409 10666872 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

18 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon249734   142   X: 10644409-10644550 Caenorhabditis elegans
Exon249737   60   X: 10645838-10645897 Caenorhabditis elegans
Exon249749   73   X: 10660796-10660868 Caenorhabditis elegans
Exon249760   83   X: 10661303-10661385 Caenorhabditis elegans
Exon249769   123   X: 10661433-10661555 Caenorhabditis elegans
Exon249778   267   X: 10661601-10661867 Caenorhabditis elegans
Exon249787   48   X: 10661934-10661981 Caenorhabditis elegans
Exon249796   72   X: 10662030-10662101 Caenorhabditis elegans
Exon249805   96   X: 10662795-10662890 Caenorhabditis elegans
Exon249814   75   X: 10663250-10663324 Caenorhabditis elegans
Exon249823   98   X: 10663660-10663757 Caenorhabditis elegans
Exon249829   107   X: 10663807-10663913 Caenorhabditis elegans
Exon249838   197   X: 10663962-10664158 Caenorhabditis elegans
Exon249847   180   X: 10664406-10664585 Caenorhabditis elegans
Exon249858   293   X: 10664630-10664922 Caenorhabditis elegans
Exon249868   162   X: 10664970-10665131 Caenorhabditis elegans
Exon249878   76   X: 10665178-10665253 Caenorhabditis elegans
Exon249889   1484   X: 10665389-10666872 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:F11A1.3e.1 10644409 10666872 1

1 Sequence

Length
3636

1 Sequence Ontology Term

Identifier Name Description
transcript