WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T05A10.1c.1 Sequence Name  T05A10.1c.1
Length (nt)  7397   Chromosome Location  X: 10769282-10782973
Chromosome . Primary Identifier  X Chromosome Location . Start  10769282
Chromosome Location . End  10782973 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T05A10.1c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004862 sma-9 T05A10.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T05A10.1c T05A10.1c 5079   X: 10775285-10775344

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T05A10.1c.1 10769282 10782973 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

26 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon250049   120   X: 10769282-10769401 Caenorhabditis elegans
Exon250064   525   X: 10773130-10773654 Caenorhabditis elegans
Exon250068   156   X: 10773707-10773862 Caenorhabditis elegans
Exon250082   538   X: 10773931-10774468 Caenorhabditis elegans
Exon250095   452   X: 10774893-10775344 Caenorhabditis elegans
Exon250108   76   X: 10775530-10775605 Caenorhabditis elegans
Exon250121   410   X: 10775830-10776239 Caenorhabditis elegans
Exon250135   138   X: 10776288-10776425 Caenorhabditis elegans
Exon250150   219   X: 10776573-10776791 Caenorhabditis elegans
Exon250164   1523   X: 10776840-10778362 Caenorhabditis elegans
Exon250179   105   X: 10778436-10778540 Caenorhabditis elegans
Exon250194   121   X: 10778743-10778863 Caenorhabditis elegans
Exon250209   98   X: 10778910-10779007 Caenorhabditis elegans
Exon250224   116   X: 10779061-10779176 Caenorhabditis elegans
Exon250239   109   X: 10779262-10779370 Caenorhabditis elegans
Exon250254   221   X: 10779422-10779642 Caenorhabditis elegans
Exon250269   158   X: 10779689-10779846 Caenorhabditis elegans
Exon250284   276   X: 10779896-10780171 Caenorhabditis elegans
Exon250299   149   X: 10780228-10780376 Caenorhabditis elegans
Exon250314   143   X: 10780465-10780607 Caenorhabditis elegans
Exon250339   464   X: 10780896-10781359 Caenorhabditis elegans
Exon250352   101   X: 10781498-10781598 Caenorhabditis elegans
Exon250364   244   X: 10781646-10781889 Caenorhabditis elegans
Exon250376   142   X: 10781940-10782081 Caenorhabditis elegans
Exon250389   137   X: 10782133-10782269 Caenorhabditis elegans
Exon250413   656   X: 10782318-10782973 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T05A10.1c.1 10769282 10782973 1

1 Sequence

Length
7397

1 Sequence Ontology Term

Identifier Name Description
transcript