WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T05A10.1c.2 Sequence Name  T05A10.1c.2
Length (nt)  6739   Chromosome Location  X: 10773081-10782386
Chromosome . Primary Identifier  X Chromosome Location . Start  10773081
Chromosome Location . End  10782386 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T05A10.1c.2

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004862 sma-9 T05A10.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T05A10.1c T05A10.1c 5079   X: 10775285-10775344

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:T05A10.1c.2 10773081 10782386 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

25 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon250052   574   X: 10773081-10773654 Caenorhabditis elegans
Exon250069   156   X: 10773707-10773862 Caenorhabditis elegans
Exon250083   538   X: 10773931-10774468 Caenorhabditis elegans
Exon250096   452   X: 10774893-10775344 Caenorhabditis elegans
Exon250109   76   X: 10775530-10775605 Caenorhabditis elegans
Exon250122   410   X: 10775830-10776239 Caenorhabditis elegans
Exon250136   138   X: 10776288-10776425 Caenorhabditis elegans
Exon250151   219   X: 10776573-10776791 Caenorhabditis elegans
Exon250165   1523   X: 10776840-10778362 Caenorhabditis elegans
Exon250180   105   X: 10778436-10778540 Caenorhabditis elegans
Exon250195   121   X: 10778743-10778863 Caenorhabditis elegans
Exon250210   98   X: 10778910-10779007 Caenorhabditis elegans
Exon250225   116   X: 10779061-10779176 Caenorhabditis elegans
Exon250240   109   X: 10779262-10779370 Caenorhabditis elegans
Exon250255   221   X: 10779422-10779642 Caenorhabditis elegans
Exon250270   158   X: 10779689-10779846 Caenorhabditis elegans
Exon250285   276   X: 10779896-10780171 Caenorhabditis elegans
Exon250300   149   X: 10780228-10780376 Caenorhabditis elegans
Exon250315   143   X: 10780465-10780607 Caenorhabditis elegans
Exon250340   464   X: 10780896-10781359 Caenorhabditis elegans
Exon250353   101   X: 10781498-10781598 Caenorhabditis elegans
Exon250365   244   X: 10781646-10781889 Caenorhabditis elegans
Exon250377   142   X: 10781940-10782081 Caenorhabditis elegans
Exon250390   137   X: 10782133-10782269 Caenorhabditis elegans
Exon250401   69   X: 10782318-10782386 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:T05A10.1c.2 10773081 10782386 1

1 Sequence

Length
6739

1 Sequence Ontology Term

Identifier Name Description
transcript