WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T05A10.1g.1 Sequence Name  T05A10.1g.1
Length (nt)  6108   Chromosome Location  X: 10773091-10781481
Chromosome . Primary Identifier  X Chromosome Location . Start  10773091
Chromosome Location . End  10781481 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T05A10.1g.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004862 sma-9 T05A10.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T05A10.1g T05A10.1g 6108   X: 10773091-10773654

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T05A10.1g.1 10773091 10781481 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

21 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon250053   564   X: 10773091-10773654 Caenorhabditis elegans
Exon250073   156   X: 10773707-10773862 Caenorhabditis elegans
Exon250087   538   X: 10773931-10774468 Caenorhabditis elegans
Exon250100   452   X: 10774893-10775344 Caenorhabditis elegans
Exon250113   76   X: 10775530-10775605 Caenorhabditis elegans
Exon250126   410   X: 10775830-10776239 Caenorhabditis elegans
Exon250140   138   X: 10776288-10776425 Caenorhabditis elegans
Exon250155   219   X: 10776573-10776791 Caenorhabditis elegans
Exon250169   1523   X: 10776840-10778362 Caenorhabditis elegans
Exon250184   105   X: 10778436-10778540 Caenorhabditis elegans
Exon250199   121   X: 10778743-10778863 Caenorhabditis elegans
Exon250214   98   X: 10778910-10779007 Caenorhabditis elegans
Exon250229   116   X: 10779061-10779176 Caenorhabditis elegans
Exon250244   109   X: 10779262-10779370 Caenorhabditis elegans
Exon250259   221   X: 10779422-10779642 Caenorhabditis elegans
Exon250274   158   X: 10779689-10779846 Caenorhabditis elegans
Exon250289   276   X: 10779896-10780171 Caenorhabditis elegans
Exon250304   149   X: 10780228-10780376 Caenorhabditis elegans
Exon250319   143   X: 10780465-10780607 Caenorhabditis elegans
Exon250330   206   X: 10780896-10781101 Caenorhabditis elegans
Exon250346   330   X: 10781152-10781481 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T05A10.1g.1 10773091 10781481 1

1 Sequence

Length
6108

1 Sequence Ontology Term

Identifier Name Description
transcript