WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T05A10.1e.1 Sequence Name  T05A10.1e.1
Length (nt)  7201   Chromosome Location  X: 10773091-10782957
Chromosome . Primary Identifier  X Chromosome Location . Start  10773091
Chromosome Location . End  10782957 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T05A10.1e.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004862 sma-9 T05A10.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T05A10.1e T05A10.1e 6630   X: 10773091-10773654

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:T05A10.1e.1 10773091 10782957 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

26 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon250060   564   X: 10773091-10773654 Caenorhabditis elegans
Exon250071   156   X: 10773707-10773862 Caenorhabditis elegans
Exon250085   538   X: 10773931-10774468 Caenorhabditis elegans
Exon250098   452   X: 10774893-10775344 Caenorhabditis elegans
Exon250111   76   X: 10775530-10775605 Caenorhabditis elegans
Exon250124   410   X: 10775830-10776239 Caenorhabditis elegans
Exon250138   138   X: 10776288-10776425 Caenorhabditis elegans
Exon250153   219   X: 10776573-10776791 Caenorhabditis elegans
Exon250167   1523   X: 10776840-10778362 Caenorhabditis elegans
Exon250182   105   X: 10778436-10778540 Caenorhabditis elegans
Exon250197   121   X: 10778743-10778863 Caenorhabditis elegans
Exon250212   98   X: 10778910-10779007 Caenorhabditis elegans
Exon250227   116   X: 10779061-10779176 Caenorhabditis elegans
Exon250242   109   X: 10779262-10779370 Caenorhabditis elegans
Exon250257   221   X: 10779422-10779642 Caenorhabditis elegans
Exon250272   158   X: 10779689-10779846 Caenorhabditis elegans
Exon250287   276   X: 10779896-10780171 Caenorhabditis elegans
Exon250302   149   X: 10780228-10780376 Caenorhabditis elegans
Exon250317   143   X: 10780465-10780607 Caenorhabditis elegans
Exon250328   206   X: 10780896-10781101 Caenorhabditis elegans
Exon250349   159   X: 10781201-10781359 Caenorhabditis elegans
Exon250355   101   X: 10781498-10781598 Caenorhabditis elegans
Exon250367   244   X: 10781646-10781889 Caenorhabditis elegans
Exon250379   142   X: 10781940-10782081 Caenorhabditis elegans
Exon250392   137   X: 10782133-10782269 Caenorhabditis elegans
Exon250408   640   X: 10782318-10782957 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:T05A10.1e.1 10773091 10782957 1

1 Sequence

Length
7201

1 Sequence Ontology Term

Identifier Name Description
transcript