WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T05A10.1j.1 Sequence Name  T05A10.1j.1
Length (nt)  7128   Chromosome Location  X: 10773091-10782969
Chromosome . Primary Identifier  X Chromosome Location . Start  10773091
Chromosome Location . End  10782969 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T05A10.1j.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004862 sma-9 T05A10.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T05A10.1j T05A10.1j 4530   X: 10773091-10773654

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:T05A10.1j.1 10773091 10782969 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

24 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon250061   564   X: 10773091-10773654 Caenorhabditis elegans
Exon250075   156   X: 10773707-10773862 Caenorhabditis elegans
Exon250089   538   X: 10773931-10774468 Caenorhabditis elegans
Exon250103   128   X: 10775217-10775344 Caenorhabditis elegans
Exon250115   76   X: 10775530-10775605 Caenorhabditis elegans
Exon250129   410   X: 10775830-10776239 Caenorhabditis elegans
Exon250143   138   X: 10776288-10776425 Caenorhabditis elegans
Exon250158   219   X: 10776573-10776791 Caenorhabditis elegans
Exon250172   1523   X: 10776840-10778362 Caenorhabditis elegans
Exon250188   105   X: 10778436-10778540 Caenorhabditis elegans
Exon250203   121   X: 10778743-10778863 Caenorhabditis elegans
Exon250218   98   X: 10778910-10779007 Caenorhabditis elegans
Exon250233   116   X: 10779061-10779176 Caenorhabditis elegans
Exon250248   109   X: 10779262-10779370 Caenorhabditis elegans
Exon250264   223   X: 10779422-10779644 Caenorhabditis elegans
Exon250278   158   X: 10779689-10779846 Caenorhabditis elegans
Exon250293   276   X: 10779896-10780171 Caenorhabditis elegans
Exon250308   149   X: 10780228-10780376 Caenorhabditis elegans
Exon250323   143   X: 10780465-10780607 Caenorhabditis elegans
Exon250342   703   X: 10780896-10781598 Caenorhabditis elegans
Exon250370   244   X: 10781646-10781889 Caenorhabditis elegans
Exon250383   142   X: 10781940-10782081 Caenorhabditis elegans
Exon250396   137   X: 10782133-10782269 Caenorhabditis elegans
Exon250409   652   X: 10782318-10782969 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:T05A10.1j.1 10773091 10782969 1

1 Sequence

Length
7128

1 Sequence Ontology Term

Identifier Name Description
transcript