WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T05A10.1h.2 Sequence Name  T05A10.1h.2
Length (nt)  3418   Chromosome Location  X: 10777902-10782693
Chromosome . Primary Identifier  X Chromosome Location . Start  10777902
Chromosome Location . End  10782693 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T05A10.1h.2

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004862 sma-9 T05A10.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T05A10.1h T05A10.1h 1614   X: 10778988-10779007

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:T05A10.1h.2 10777902 10782693 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

17 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon250177   461   X: 10777902-10778362 Caenorhabditis elegans
Exon250186   105   X: 10778436-10778540 Caenorhabditis elegans
Exon250201   121   X: 10778743-10778863 Caenorhabditis elegans
Exon250216   98   X: 10778910-10779007 Caenorhabditis elegans
Exon250231   116   X: 10779061-10779176 Caenorhabditis elegans
Exon250246   109   X: 10779262-10779370 Caenorhabditis elegans
Exon250261   221   X: 10779422-10779642 Caenorhabditis elegans
Exon250276   158   X: 10779689-10779846 Caenorhabditis elegans
Exon250291   276   X: 10779896-10780171 Caenorhabditis elegans
Exon250306   149   X: 10780228-10780376 Caenorhabditis elegans
Exon250321   143   X: 10780465-10780607 Caenorhabditis elegans
Exon250332   206   X: 10780896-10781101 Caenorhabditis elegans
Exon250344   208   X: 10781152-10781359 Caenorhabditis elegans
Exon250362   392   X: 10781498-10781889 Caenorhabditis elegans
Exon250382   142   X: 10781940-10782081 Caenorhabditis elegans
Exon250395   137   X: 10782133-10782269 Caenorhabditis elegans
Exon250404   376   X: 10782318-10782693 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:T05A10.1h.2 10777902 10782693 1

1 Sequence

Length
3418

1 Sequence Ontology Term

Identifier Name Description
transcript