WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T21E8.1a.1 Sequence Name  T21E8.1a.1
Length (nt)  3984   Chromosome Location  X: 10871201-10876301
Chromosome . Primary Identifier  X Chromosome Location . Start  10871201
Chromosome Location . End  10876301 Method  Coding_transcript
Paste the following link
Quick Links:
SummaryGenomicsOther
 
Quick Links:
SummaryGenomicsOther
 
Lists
This MRNA isn't in any lists. Upload a list.

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T21E8.1a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004000 pgp-6 T21E8.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T21E8.1a T21E8.1a 3792   X: 10871346-10871708

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:T21E8.1a.1 10871201 10876301 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

17 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon251166   508   X: 10871201-10871708 Caenorhabditis elegans
Exon251169   204   X: 10871754-10871957 Caenorhabditis elegans
Exon251172   465   X: 10872008-10872472 Caenorhabditis elegans
Exon251175   129   X: 10872523-10872651 Caenorhabditis elegans
Exon251178   105   X: 10872696-10872800 Caenorhabditis elegans
Exon251181   363   X: 10872865-10873227 Caenorhabditis elegans
Exon251184   284   X: 10873274-10873557 Caenorhabditis elegans
Exon251187   97   X: 10873608-10873704 Caenorhabditis elegans
Exon251190   90   X: 10873945-10874034 Caenorhabditis elegans
Exon251193   615   X: 10874079-10874693 Caenorhabditis elegans
Exon251196   114   X: 10874743-10874856 Caenorhabditis elegans
Exon251199   172   X: 10874900-10875071 Caenorhabditis elegans
Exon251202   297   X: 10875270-10875566 Caenorhabditis elegans
Exon251205   134   X: 10875614-10875747 Caenorhabditis elegans
Exon251208   110   X: 10875793-10875902 Caenorhabditis elegans
Exon251212   157   X: 10875953-10876109 Caenorhabditis elegans
Exon251215   140   X: 10876162-10876301 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:T21E8.1a.1 10871201 10876301 -1

1 Sequence

Length
3984

1 Sequence Ontology Term

Identifier Name Description
transcript