WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:K09C8.1.1 Sequence Name  K09C8.1.1
Length (nt)  2526   Chromosome Location  X: 10954134-10958233
Chromosome . Primary Identifier  X Chromosome Location . Start  10954134
Chromosome Location . End  10958233 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
K09C8.1.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003943 pbo-4 K09C8.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:K09C8.1 K09C8.1 2352   X: 10954134-10954315

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:K09C8.1.1 10954134 10958233 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

15 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon251356   182   X: 10954134-10954315 Caenorhabditis elegans
Exon251357   185   X: 10954365-10954549 Caenorhabditis elegans
Exon251358   88   X: 10954935-10955022 Caenorhabditis elegans
Exon251359   157   X: 10955068-10955224 Caenorhabditis elegans
Exon251360   285   X: 10955268-10955552 Caenorhabditis elegans
Exon251361   112   X: 10955602-10955713 Caenorhabditis elegans
Exon251362   178   X: 10955766-10955943 Caenorhabditis elegans
Exon251363   214   X: 10955989-10956202 Caenorhabditis elegans
Exon251364   126   X: 10956248-10956373 Caenorhabditis elegans
Exon251365   156   X: 10956419-10956574 Caenorhabditis elegans
Exon251366   119   X: 10956622-10956740 Caenorhabditis elegans
Exon251367   229   X: 10956853-10957081 Caenorhabditis elegans
Exon251368   92   X: 10957136-10957227 Caenorhabditis elegans
Exon251369   125   X: 10957282-10957406 Caenorhabditis elegans
Exon251370   278   X: 10957956-10958233 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:K09C8.1.1 10954134 10958233 1

1 Sequence

Length
2526

1 Sequence Ontology Term

Identifier Name Description
transcript