WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F42E11.1a.1 Sequence Name  F42E11.1a.1
Length (nt)  4081   Chromosome Location  X: 11358395-11364050
Chromosome . Primary Identifier  X Chromosome Location . Start  11358395
Chromosome Location . End  11364050 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F42E11.1a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003998 pgp-4 F42E11.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F42E11.1a F42E11.1a 3843   X: 11358523-11358549

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F42E11.1a.1 11358395 11364050 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

15 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon252591   20   X: 11358395-11358414 Caenorhabditis elegans
Exon252592   104   X: 11358446-11358549 Caenorhabditis elegans
Exon252594   111   X: 11359153-11359263 Caenorhabditis elegans
Exon252596   103   X: 11359316-11359418 Caenorhabditis elegans
Exon252599   143   X: 11359465-11359607 Caenorhabditis elegans
Exon252602   431   X: 11359954-11360384 Caenorhabditis elegans
Exon252605   117   X: 11360432-11360548 Caenorhabditis elegans
Exon252608   406   X: 11360654-11361059 Caenorhabditis elegans
Exon252611   574   X: 11361109-11361682 Caenorhabditis elegans
Exon252614   590   X: 11361733-11362322 Caenorhabditis elegans
Exon252617   204   X: 11362377-11362580 Caenorhabditis elegans
Exon252620   242   X: 11362637-11362878 Caenorhabditis elegans
Exon252623   157   X: 11362925-11363081 Caenorhabditis elegans
Exon252626   482   X: 11363127-11363608 Caenorhabditis elegans
Exon252631   397   X: 11363654-11364050 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F42E11.1a.1 11358395 11364050 1

1 Sequence

Length
4081

1 Sequence Ontology Term

Identifier Name Description
transcript