WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:F42E11.1a Sequence Name  F42E11.1a
Length (nt)  3843   Chromosome Location  X: 11358523-11358549
Chromosome . Primary Identifier  X Chromosome Location . Start  11358523
Chromosome Location . End  11358549
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F42E11.1a

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE44238 PGP-4, isoform a 141.4 1280 Caenorhabditis elegans
 

Other

2 RNAi

WormBase ID
WBRNAi00047095
WBRNAi00014821

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:F42E11.1a 11358523 11358549 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003998 pgp-4 F42E11.1 Caenorhabditis elegans

14 Locations


Feature . Primary Identifier
Start End Strand
CDS:F42E11.1a 11358523 11358549 1
CDS:F42E11.1a 11359153 11359263 1
CDS:F42E11.1a 11359316 11359418 1
CDS:F42E11.1a 11359465 11359607 1
CDS:F42E11.1a 11359954 11360384 1
CDS:F42E11.1a 11360432 11360548 1
CDS:F42E11.1a 11360654 11361059 1
CDS:F42E11.1a 11361109 11361682 1
CDS:F42E11.1a 11361733 11362322 1
CDS:F42E11.1a 11362377 11362580 1
CDS:F42E11.1a 11362637 11362878 1
CDS:F42E11.1a 11362925 11363081 1
CDS:F42E11.1a 11363127 11363608 1
CDS:F42E11.1a 11363654 11363909 1

1 Sequence

Length
3843

1 Sequence Ontology Term

Identifier Name Description
CDS  

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:F42E11.1a.1 F42E11.1a.1 4081   X: 11358395-11364050