WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:F42E11.2a Sequence Name  F42E11.2a
Length (nt)  1560   Chromosome Location  X: 11368758-11368871
Chromosome . Primary Identifier  X Chromosome Location . Start  11368758
Chromosome Location . End  11368871
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F42E11.2a

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE03309 TTYH-1, isoform a 58.2 519 Caenorhabditis elegans
 

Other

4 RNAi

WormBase ID
WBRNAi00047096
WBRNAi00047097
WBRNAi00014822
WBRNAi00032139

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
CDS:F42E11.2a 11368758 11368871 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00009632 ttyh-1 F42E11.2 Caenorhabditis elegans

10 Locations


Feature . Primary Identifier 		Start End Strand
CDS:F42E11.2a 11368758 11368871 1
CDS:F42E11.2a 11370374 11370543 1
CDS:F42E11.2a 11370806 11371168 1
CDS:F42E11.2a 11371553 11371721 1
CDS:F42E11.2a 11371771 11371989 1
CDS:F42E11.2a 11372048 11372187 1
CDS:F42E11.2a 11372392 11372493 1
CDS:F42E11.2a 11373042 11373155 1
CDS:F42E11.2a 11373274 11373375 1
CDS:F42E11.2a 11373957 11374023 1

1 Sequence

Length
1560

1 Sequence Ontology Term

Identifier Name Description
CDS  

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:F42E11.2a.1 F42E11.2a.1 1934   X: 11368719-11374358