WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F42E11.2a.1 Sequence Name  F42E11.2a.1
Length (nt)  1934   Chromosome Location  X: 11368719-11374358
Chromosome . Primary Identifier  X Chromosome Location . Start  11368719
Chromosome Location . End  11374358 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F42E11.2a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00009632 ttyh-1 F42E11.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F42E11.2a F42E11.2a 1560   X: 11368758-11368871

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F42E11.2a.1 11368719 11374358 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon252694   153   X: 11368719-11368871 Caenorhabditis elegans
Exon252697   170   X: 11370374-11370543 Caenorhabditis elegans
Exon252701   363   X: 11370806-11371168 Caenorhabditis elegans
Exon252703   169   X: 11371553-11371721 Caenorhabditis elegans
Exon252705   219   X: 11371771-11371989 Caenorhabditis elegans
Exon252707   140   X: 11372048-11372187 Caenorhabditis elegans
Exon252709   102   X: 11372392-11372493 Caenorhabditis elegans
Exon252711   114   X: 11373042-11373155 Caenorhabditis elegans
Exon252713   102   X: 11373274-11373375 Caenorhabditis elegans
Exon252714   402   X: 11373957-11374358 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F42E11.2a.1 11368719 11374358 1

1 Sequence

Length
1934

1 Sequence Ontology Term

Identifier Name Description
transcript