WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F46C3.1.1 Sequence Name  F46C3.1.1
Length (nt)  3709   Chromosome Location  X: 11410176-11414887
Chromosome . Primary Identifier  X Chromosome Location . Start  11410176
Chromosome Location . End  11414887 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F46C3.1.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003970 pek-1 F46C3.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F46C3.1 F46C3.1 3234   X: 11410575-11410661

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F46C3.1.1 11410176 11414887 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon252938   486   X: 11410176-11410661 Caenorhabditis elegans
Exon252939   582   X: 11410739-11411320 Caenorhabditis elegans
Exon252940   275   X: 11411401-11411675 Caenorhabditis elegans
Exon252941   371   X: 11411725-11412095 Caenorhabditis elegans
Exon252942   296   X: 11412146-11412441 Caenorhabditis elegans
Exon252943   102   X: 11412764-11412865 Caenorhabditis elegans
Exon252944   257   X: 11412915-11413171 Caenorhabditis elegans
Exon252945   171   X: 11413222-11413392 Caenorhabditis elegans
Exon252946   277   X: 11413440-11413716 Caenorhabditis elegans
Exon252947   537   X: 11413766-11414302 Caenorhabditis elegans
Exon252948   165   X: 11414476-11414640 Caenorhabditis elegans
Exon252949   190   X: 11414698-11414887 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F46C3.1.1 11410176 11414887 -1

1 Sequence

Length
3709

1 Sequence Ontology Term

Identifier Name Description
transcript