WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F46C3.2.1 Sequence Name  F46C3.2.1
Length (nt)  1276   Chromosome Location  X: 11416653-11418767
Chromosome . Primary Identifier  X Chromosome Location . Start  11416653
Chromosome Location . End  11418767 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F46C3.2.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00009777 F46C3.2 F46C3.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F46C3.2 F46C3.2 1158   X: 11416744-11416807

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F46C3.2.1 11416653 11418767 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

9 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon252950   155   X: 11416653-11416807 Caenorhabditis elegans
Exon252951   168   X: 11416852-11417019 Caenorhabditis elegans
Exon252952   129   X: 11417077-11417205 Caenorhabditis elegans
Exon252953   181   X: 11417255-11417435 Caenorhabditis elegans
Exon252954   142   X: 11417483-11417624 Caenorhabditis elegans
Exon252955   147   X: 11418062-11418208 Caenorhabditis elegans
Exon252956   68   X: 11418253-11418320 Caenorhabditis elegans
Exon252957   92   X: 11418433-11418524 Caenorhabditis elegans
Exon252958   194   X: 11418574-11418767 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F46C3.2.1 11416653 11418767 -1

1 Sequence

Length
1276

1 Sequence Ontology Term

Identifier Name Description
transcript