WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F46C3.3a.1 Sequence Name  F46C3.3a.1
Length (nt)  8076   Chromosome Location  X: 11420465-11433588
Chromosome . Primary Identifier  X Chromosome Location . Start  11420465
Chromosome Location . End  11433588 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F46C3.3a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00002037 hum-4 F46C3.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F46C3.3a F46C3.3a 7734   X: 11420743-11420823

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:F46C3.3a.1 11420465 11433588 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

42 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon252962   359   X: 11420465-11420823 Caenorhabditis elegans
Exon252972   102   X: 11421101-11421202 Caenorhabditis elegans
Exon252983   167   X: 11421273-11421439 Caenorhabditis elegans
Exon252994   143   X: 11421490-11421632 Caenorhabditis elegans
Exon253005   140   X: 11422050-11422189 Caenorhabditis elegans
Exon253016   161   X: 11422239-11422399 Caenorhabditis elegans
Exon253027   175   X: 11422446-11422620 Caenorhabditis elegans
Exon253038   95   X: 11422702-11422796 Caenorhabditis elegans
Exon253049   134   X: 11422862-11422995 Caenorhabditis elegans
Exon253060   280   X: 11423153-11423432 Caenorhabditis elegans
Exon253071   109   X: 11423485-11423593 Caenorhabditis elegans
Exon253082   150   X: 11423644-11423793 Caenorhabditis elegans
Exon253093   253   X: 11423847-11424099 Caenorhabditis elegans
Exon253104   125   X: 11424154-11424278 Caenorhabditis elegans
Exon253115   119   X: 11424878-11424996 Caenorhabditis elegans
Exon253126   237   X: 11425042-11425278 Caenorhabditis elegans
Exon253137   121   X: 11425328-11425448 Caenorhabditis elegans
Exon253148   111   X: 11425494-11425604 Caenorhabditis elegans
Exon253152   174   X: 11425682-11425855 Caenorhabditis elegans
Exon253163   127   X: 11425904-11426030 Caenorhabditis elegans
Exon253174   83   X: 11426237-11426319 Caenorhabditis elegans
Exon253184   49   X: 11426977-11427025 Caenorhabditis elegans
Exon253193   122   X: 11427097-11427218 Caenorhabditis elegans
Exon253204   195   X: 11427499-11427693 Caenorhabditis elegans
Exon253216   476   X: 11427743-11428218 Caenorhabditis elegans
Exon253226   227   X: 11428401-11428627 Caenorhabditis elegans
Exon253231   154   X: 11428738-11428891 Caenorhabditis elegans
Exon253235   125   X: 11428940-11429064 Caenorhabditis elegans
Exon253239   195   X: 11429112-11429306 Caenorhabditis elegans
Exon253243   135   X: 11429361-11429495 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:F46C3.3a.1 11420465 11433588 -1

1 Sequence

Length
8076

1 Sequence Ontology Term

Identifier Name Description
transcript