WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F46C3.3c.3 Sequence Name  F46C3.3c.3
Length (nt)  4321   Chromosome Location  X: 11420474-11428634
Chromosome . Primary Identifier  X Chromosome Location . Start  11420474
Chromosome Location . End  11428634 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F46C3.3c.3

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00002037 hum-4 F46C3.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F46C3.3c F46C3.3c 2892   X: 11420743-11420823

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:F46C3.3c.3 11420474 11428634 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

25 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon252965   350   X: 11420474-11420823 Caenorhabditis elegans
Exon252976   102   X: 11421101-11421202 Caenorhabditis elegans
Exon252987   167   X: 11421273-11421439 Caenorhabditis elegans
Exon252998   143   X: 11421490-11421632 Caenorhabditis elegans
Exon253009   140   X: 11422050-11422189 Caenorhabditis elegans
Exon253020   161   X: 11422239-11422399 Caenorhabditis elegans
Exon253031   175   X: 11422446-11422620 Caenorhabditis elegans
Exon253042   95   X: 11422702-11422796 Caenorhabditis elegans
Exon253053   134   X: 11422862-11422995 Caenorhabditis elegans
Exon253064   280   X: 11423153-11423432 Caenorhabditis elegans
Exon253075   109   X: 11423485-11423593 Caenorhabditis elegans
Exon253086   150   X: 11423644-11423793 Caenorhabditis elegans
Exon253097   253   X: 11423847-11424099 Caenorhabditis elegans
Exon253108   125   X: 11424154-11424278 Caenorhabditis elegans
Exon253119   119   X: 11424878-11424996 Caenorhabditis elegans
Exon253130   237   X: 11425042-11425278 Caenorhabditis elegans
Exon253141   121   X: 11425328-11425448 Caenorhabditis elegans
Exon253156   174   X: 11425682-11425855 Caenorhabditis elegans
Exon253166   127   X: 11425904-11426030 Caenorhabditis elegans
Exon253176   83   X: 11426237-11426319 Caenorhabditis elegans
Exon253186   49   X: 11426977-11427025 Caenorhabditis elegans
Exon253196   122   X: 11427097-11427218 Caenorhabditis elegans
Exon253207   195   X: 11427499-11427693 Caenorhabditis elegans
Exon253219   476   X: 11427743-11428218 Caenorhabditis elegans
Exon253230   234   X: 11428401-11428634 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:F46C3.3c.3 11420474 11428634 -1

1 Sequence

Length
4321

1 Sequence Ontology Term

Identifier Name Description
transcript