WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F46C3.3e.1 Sequence Name  F46C3.3e.1
Length (nt)  3861   Chromosome Location  X: 11420743-11428150
Chromosome . Primary Identifier  X Chromosome Location . Start  11420743
Chromosome Location . End  11428150 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F46C3.3e.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00002037 hum-4 F46C3.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F46C3.3e F46C3.3e 3861   X: 11420743-11420823

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:F46C3.3e.1 11420743 11428150 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

25 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon252967   81   X: 11420743-11420823 Caenorhabditis elegans
Exon252979   102   X: 11421101-11421202 Caenorhabditis elegans
Exon252990   167   X: 11421273-11421439 Caenorhabditis elegans
Exon253001   143   X: 11421490-11421632 Caenorhabditis elegans
Exon253012   140   X: 11422050-11422189 Caenorhabditis elegans
Exon253023   161   X: 11422239-11422399 Caenorhabditis elegans
Exon253034   175   X: 11422446-11422620 Caenorhabditis elegans
Exon253045   95   X: 11422702-11422796 Caenorhabditis elegans
Exon253056   134   X: 11422862-11422995 Caenorhabditis elegans
Exon253067   280   X: 11423153-11423432 Caenorhabditis elegans
Exon253078   109   X: 11423485-11423593 Caenorhabditis elegans
Exon253089   150   X: 11423644-11423793 Caenorhabditis elegans
Exon253100   253   X: 11423847-11424099 Caenorhabditis elegans
Exon253111   125   X: 11424154-11424278 Caenorhabditis elegans
Exon253122   119   X: 11424878-11424996 Caenorhabditis elegans
Exon253133   237   X: 11425042-11425278 Caenorhabditis elegans
Exon253144   121   X: 11425328-11425448 Caenorhabditis elegans
Exon253151   111   X: 11425494-11425604 Caenorhabditis elegans
Exon253159   174   X: 11425682-11425855 Caenorhabditis elegans
Exon253169   127   X: 11425904-11426030 Caenorhabditis elegans
Exon253179   83   X: 11426237-11426319 Caenorhabditis elegans
Exon253189   49   X: 11426977-11427025 Caenorhabditis elegans
Exon253199   122   X: 11427097-11427218 Caenorhabditis elegans
Exon253210   195   X: 11427499-11427693 Caenorhabditis elegans
Exon253214   408   X: 11427743-11428150 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:F46C3.3e.1 11420743 11428150 -1

1 Sequence

Length
3861

1 Sequence Ontology Term

Identifier Name Description
transcript