WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F29G6.3f.2 Sequence Name  F29G6.3f.2
Length (nt)  6480   Chromosome Location  X: 11511562-11519066
Chromosome . Primary Identifier  X Chromosome Location . Start  11511562
Chromosome Location . End  11519066 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F29G6.3f.2

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00009259 hpo-34 F29G6.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F29G6.3f F29G6.3f 5406   X: 11512963-11517504

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:F29G6.3f.2 11511562 11519066 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

17 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon253372   284   X: 11511562-11511845 Caenorhabditis elegans
Exon253380   48   X: 11511892-11511939 Caenorhabditis elegans
Exon253387   108   X: 11511986-11512093 Caenorhabditis elegans
Exon253394   272   X: 11512138-11512409 Caenorhabditis elegans
Exon253400   58   X: 11512523-11512580 Caenorhabditis elegans
Exon253406   138   X: 11512662-11512799 Caenorhabditis elegans
Exon253410   4659   X: 11512846-11517504 Caenorhabditis elegans
Exon253426   108   X: 11517551-11517658 Caenorhabditis elegans
Exon253433   102   X: 11517705-11517806 Caenorhabditis elegans
Exon253440   105   X: 11517854-11517958 Caenorhabditis elegans
Exon253447   118   X: 11518005-11518122 Caenorhabditis elegans
Exon253454   101   X: 11518180-11518280 Caenorhabditis elegans
Exon253462   66   X: 11518324-11518389 Caenorhabditis elegans
Exon253468   81   X: 11518441-11518521 Caenorhabditis elegans
Exon253474   54   X: 11518734-11518787 Caenorhabditis elegans
Exon253480   101   X: 11518845-11518945 Caenorhabditis elegans
Exon253487   77   X: 11518990-11519066 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:F29G6.3f.2 11511562 11519066 -1

1 Sequence

Length
6480

1 Sequence Ontology Term

Identifier Name Description
transcript