WormMine

WS296

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:H05G16.1b.1 Sequence Name  H05G16.1b.1
Length (nt)  3433   Chromosome Location  X: 11572505-11585126
Chromosome . Primary Identifier  X Chromosome Location . Start  11572505
Chromosome Location . End  11585126 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
H05G16.1b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001490 frm-3 H05G16.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:H05G16.1b H05G16.1b 3207   X: 11572565-11572593

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:H05G16.1b.1 11572505 11585126 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

20 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon253671   89   X: 11572505-11572593 Caenorhabditis elegans
Exon253676   133   X: 11576249-11576381 Caenorhabditis elegans
Exon253679   105   X: 11576442-11576546 Caenorhabditis elegans
Exon253682   125   X: 11576609-11576733 Caenorhabditis elegans
Exon253686   97   X: 11577645-11577741 Caenorhabditis elegans
Exon253689   125   X: 11577792-11577916 Caenorhabditis elegans
Exon253692   244   X: 11577960-11578203 Caenorhabditis elegans
Exon253695   161   X: 11578254-11578414 Caenorhabditis elegans
Exon253698   75   X: 11578460-11578534 Caenorhabditis elegans
Exon253699   203   X: 11578620-11578822 Caenorhabditis elegans
Exon253703   118   X: 11581794-11581911 Caenorhabditis elegans
Exon253704   301   X: 11581959-11582259 Caenorhabditis elegans
Exon253706   96   X: 11582769-11582864 Caenorhabditis elegans
Exon253708   128   X: 11582912-11583039 Caenorhabditis elegans
Exon253710   159   X: 11583084-11583242 Caenorhabditis elegans
Exon253712   448   X: 11583291-11583738 Caenorhabditis elegans
Exon253714   205   X: 11583784-11583988 Caenorhabditis elegans
Exon253716   221   X: 11584042-11584262 Caenorhabditis elegans
Exon253718   155   X: 11584648-11584802 Caenorhabditis elegans
Exon253721   245   X: 11584882-11585126 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:H05G16.1b.1 11572505 11585126 1

1 Sequence

Length
3433

1 Sequence Ontology Term

Identifier Name Description
transcript