WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C35C5.6.1 Sequence Name  C35C5.6.1
Length (nt)  4193   Chromosome Location  X: 11563923-11569756
Chromosome . Primary Identifier  X Chromosome Location . Start  11563923
Chromosome Location . End  11569756 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C35C5.6.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00007956 trpp-9 C35C5.6 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C35C5.6 C35C5.6 3723   X: 11563988-11564050

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:C35C5.6.1 11563923 11569756 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

18 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon253684   12   X: 11563923-11563934 Caenorhabditis elegans
Exon253685   78   X: 11563973-11564050 Caenorhabditis elegans
Exon253686   150   X: 11564124-11564273 Caenorhabditis elegans
Exon253687   204   X: 11564395-11564598 Caenorhabditis elegans
Exon253688   150   X: 11564643-11564792 Caenorhabditis elegans
Exon253689   80   X: 11565152-11565231 Caenorhabditis elegans
Exon253690   137   X: 11565277-11565413 Caenorhabditis elegans
Exon253691   430   X: 11565464-11565893 Caenorhabditis elegans
Exon253692   384   X: 11565942-11566325 Caenorhabditis elegans
Exon253693   166   X: 11566373-11566538 Caenorhabditis elegans
Exon253694   167   X: 11566639-11566805 Caenorhabditis elegans
Exon253695   110   X: 11566852-11566961 Caenorhabditis elegans
Exon253696   199   X: 11567005-11567203 Caenorhabditis elegans
Exon253697   747   X: 11567252-11567998 Caenorhabditis elegans
Exon253698   271   X: 11568052-11568322 Caenorhabditis elegans
Exon253699   184   X: 11568420-11568603 Caenorhabditis elegans
Exon253700   122   X: 11568650-11568771 Caenorhabditis elegans
Exon253701   602   X: 11569155-11569756 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:C35C5.6.1 11563923 11569756 1

1 Sequence

Length
4193

1 Sequence Ontology Term

Identifier Name Description
transcript