WormMine

WS296

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:H05G16.1c.1 Sequence Name  H05G16.1c.1
Length (nt)  2573   Chromosome Location  X: 11581293-11585122
Chromosome . Primary Identifier  X Chromosome Location . Start  11581293
Chromosome Location . End  11585122 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
H05G16.1c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001490 frm-3 H05G16.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:H05G16.1c H05G16.1c 1953   X: 11581751-11581911

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:H05G16.1c.1 11581293 11585122 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon253702   619   X: 11581293-11581911 Caenorhabditis elegans
Exon253705   301   X: 11581959-11582259 Caenorhabditis elegans
Exon253707   96   X: 11582769-11582864 Caenorhabditis elegans
Exon253709   128   X: 11582912-11583039 Caenorhabditis elegans
Exon253711   159   X: 11583084-11583242 Caenorhabditis elegans
Exon253713   448   X: 11583291-11583738 Caenorhabditis elegans
Exon253715   205   X: 11583784-11583988 Caenorhabditis elegans
Exon253717   221   X: 11584042-11584262 Caenorhabditis elegans
Exon253719   155   X: 11584648-11584802 Caenorhabditis elegans
Exon253720   241   X: 11584882-11585122 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:H05G16.1c.1 11581293 11585122 1

1 Sequence

Length
2573

1 Sequence Ontology Term

Identifier Name Description
transcript