WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F52D10.1.1 Sequence Name  F52D10.1.1
Length (nt)  2279   Chromosome Location  X: 11585675-11589717
Chromosome . Primary Identifier  X Chromosome Location . Start  11585675
Chromosome Location . End  11589717 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F52D10.1.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00009929 abts-2 F52D10.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F52D10.1 F52D10.1 2214   X: 11585680-11585831

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:F52D10.1.1 11585675 11589717 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

18 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon253756   157   X: 11585675-11585831 Caenorhabditis elegans
Exon253757   177   X: 11585928-11586104 Caenorhabditis elegans
Exon253758   124   X: 11586155-11586278 Caenorhabditis elegans
Exon253759   102   X: 11586326-11586427 Caenorhabditis elegans
Exon253760   111   X: 11586878-11586988 Caenorhabditis elegans
Exon253761   85   X: 11587038-11587122 Caenorhabditis elegans
Exon253762   123   X: 11587175-11587297 Caenorhabditis elegans
Exon253763   114   X: 11587341-11587454 Caenorhabditis elegans
Exon253764   133   X: 11587502-11587634 Caenorhabditis elegans
Exon253765   74   X: 11587679-11587752 Caenorhabditis elegans
Exon253766   151   X: 11587952-11588102 Caenorhabditis elegans
Exon253767   92   X: 11588144-11588235 Caenorhabditis elegans
Exon253768   169   X: 11588284-11588452 Caenorhabditis elegans
Exon253769   174   X: 11588501-11588674 Caenorhabditis elegans
Exon253770   119   X: 11588876-11588994 Caenorhabditis elegans
Exon253771   80   X: 11589253-11589332 Caenorhabditis elegans
Exon253772   170   X: 11589380-11589549 Caenorhabditis elegans
Exon253773   124   X: 11589594-11589717 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:F52D10.1.1 11585675 11589717 1

1 Sequence

Length
2279

1 Sequence Ontology Term

Identifier Name Description
transcript