WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F54F7.5.1 Sequence Name  F54F7.5.1
Length (nt)  3403   Chromosome Location  X: 11857478-11862373
Chromosome . Primary Identifier  X Chromosome Location . Start  11857478
Chromosome Location . End  11862373 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F54F7.5.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003219 mes-1 F54F7.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F54F7.5 F54F7.5 2901   X: 11857501-11857620

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F54F7.5.1 11857478 11862373 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon254516   143   X: 11857478-11857620 Caenorhabditis elegans
Exon254517   84   X: 11857679-11857762 Caenorhabditis elegans
Exon254518   100   X: 11857817-11857916 Caenorhabditis elegans
Exon254519   224   X: 11857971-11858194 Caenorhabditis elegans
Exon254520   318   X: 11858409-11858726 Caenorhabditis elegans
Exon254521   163   X: 11858795-11858957 Caenorhabditis elegans
Exon254522   332   X: 11859005-11859336 Caenorhabditis elegans
Exon254523   306   X: 11859981-11860286 Caenorhabditis elegans
Exon254524   183   X: 11860339-11860521 Caenorhabditis elegans
Exon254525   241   X: 11860569-11860809 Caenorhabditis elegans
Exon254526   703   X: 11860888-11861590 Caenorhabditis elegans
Exon254527   606   X: 11861768-11862373 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F54F7.5.1 11857478 11862373 1

1 Sequence

Length
3403

1 Sequence Ontology Term

Identifier Name Description
transcript