WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:W06B3.2a.2 Sequence Name  W06B3.2a.2
Length (nt)  2618   Chromosome Location  X: 11997515-12005549
Chromosome . Primary Identifier  X Chromosome Location . Start  11997515
Chromosome Location . End  12005549 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
W06B3.2a.2

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004859 sma-5 W06B3.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:W06B3.2a W06B3.2a 1497   X: 11998022-11998091

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:W06B3.2a.2 11997515 12005549 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon254696   577   X: 11997515-11998091 Caenorhabditis elegans
Exon254704   97   X: 11998311-11998407 Caenorhabditis elegans
Exon254708   118   X: 11998500-11998617 Caenorhabditis elegans
Exon254715   156   X: 11998752-11998907 Caenorhabditis elegans
Exon254722   465   X: 11998956-11999420 Caenorhabditis elegans
Exon254729   110   X: 11999971-12000080 Caenorhabditis elegans
Exon254736   160   X: 12000241-12000400 Caenorhabditis elegans
Exon254743   179   X: 12000454-12000632 Caenorhabditis elegans
Exon254750   184   X: 12001204-12001387 Caenorhabditis elegans
Exon254756   572   X: 12004978-12005549 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:W06B3.2a.2 11997515 12005549 -1

1 Sequence

Length
2618

1 Sequence Ontology Term

Identifier Name Description
transcript