WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00198643 Gene Name  W06B3.6
Sequence Name  ? W06B3.6 Organism  Caenorhabditis elegans
Automated Description  Is affected by pgrn-1 and pmt-2 based on RNA-seq and microarray studies. Biotype  SO:0001263
Genetic Position  Length (nt)  ? 176
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00198643

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:W06B3.6 W06B3.6 176   X: 12011552-12011727
 

Other

0 CDSs

0 RNAi Result

8 Allele

Public Name
gk964260
gk964029
gk962707
gk964028
gk963810
gk932372
gk295423
gk295422

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
WBGene00198643 12011552 12011727 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrX_12011728..12014248   2521 X: 12011728-12014248 Caenorhabditis elegans

2 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly decreased expression in pmt-2(RNAi) animals comparing to control animals iinjected with empty vector. Fold-change > 1.5, ANOVA P values < 0.05. WBPaper00055482:pmt-2(RNAi)_downregulated
  Genes differentially expressed in pgrn-1(tm985) and ced-1(e1735) but not in ced-3(n717) as compared to N2E. Differential expression analysis was performed using the EdgeR Bioconductor package (19910308), and differentially expressed genes were selected based on False Discovery Rate (FDR Benjamini Hochberg adjusted p-values) estimated at <=5%. WBPaper00044246:pgrn-1_ced-1_downregulated

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier
Start End Strand
WBGene00198643 12011552 12011727 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
176

1 Sequence Ontology Term