WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C06A5.6.1 Sequence Name  C06A5.6.1
Length (nt)  2788   Chromosome Location  I: 5981766-5985869
Chromosome . Primary Identifier  I Chromosome Location . Start  5981766
Chromosome Location . End  5985869 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C06A5.6.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00015504 simr-1 C06A5.6 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C06A5.6 C06A5.6 2076   I: 5983346-5983435

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C06A5.6.1 5981766 5985869 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

13 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon14668   179   I: 5981766-5981944 Caenorhabditis elegans
Exon14670   103   I: 5981992-5982094 Caenorhabditis elegans
Exon14673   139   I: 5982144-5982282 Caenorhabditis elegans
Exon14677   146   I: 5982332-5982477 Caenorhabditis elegans
Exon14680   124   I: 5982529-5982652 Caenorhabditis elegans
Exon14684   101   I: 5983335-5983435 Caenorhabditis elegans
Exon14686   137   I: 5983490-5983626 Caenorhabditis elegans
Exon14689   142   I: 5983770-5983911 Caenorhabditis elegans
Exon14692   119   I: 5983961-5984079 Caenorhabditis elegans
Exon14695   629   I: 5984126-5984754 Caenorhabditis elegans
Exon14698   665   I: 5984805-5985469 Caenorhabditis elegans
Exon14701   140   I: 5985516-5985655 Caenorhabditis elegans
Exon14704   164   I: 5985706-5985869 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C06A5.6.1 5981766 5985869 -1

1 Sequence

Length
2788

1 Sequence Ontology Term

Identifier Name Description
transcript