WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C06A5.6.3 Sequence Name  C06A5.6.3
Length (nt)  2785   Chromosome Location  I: 5981766-5985871
Chromosome . Primary Identifier  I Chromosome Location . Start  5981766
Chromosome Location . End  5985871 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C06A5.6.3

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00015504 simr-1 C06A5.6 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C06A5.6 C06A5.6 2076   I: 5983346-5983435

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C06A5.6.3 5981766 5985871 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

13 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon14667   179   I: 5981766-5981944 Caenorhabditis elegans
Exon14671   103   I: 5981992-5982094 Caenorhabditis elegans
Exon14674   139   I: 5982144-5982282 Caenorhabditis elegans
Exon14678   146   I: 5982332-5982477 Caenorhabditis elegans
Exon14681   119   I: 5982534-5982652 Caenorhabditis elegans
Exon14685   101   I: 5983335-5983435 Caenorhabditis elegans
Exon14688   137   I: 5983490-5983626 Caenorhabditis elegans
Exon14691   142   I: 5983770-5983911 Caenorhabditis elegans
Exon14694   119   I: 5983961-5984079 Caenorhabditis elegans
Exon14697   629   I: 5984126-5984754 Caenorhabditis elegans
Exon14700   665   I: 5984805-5985469 Caenorhabditis elegans
Exon14703   140   I: 5985516-5985655 Caenorhabditis elegans
Exon14706   166   I: 5985706-5985871 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C06A5.6.3 5981766 5985871 -1

1 Sequence

Length
2785

1 Sequence Ontology Term

Identifier Name Description
transcript