WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C16D6.2c.1 Sequence Name  C16D6.2c.1
Length (nt)  2054   Chromosome Location  X: 12536978-12551684
Chromosome . Primary Identifier  X Chromosome Location . Start  12536978
Chromosome Location . End  12551684 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C16D6.2c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00007635 npr-4 C16D6.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C16D6.2c C16D6.2c 1197   X: 12538030-12538090

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C16D6.2c.1 12536978 12551684 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon255847   707   X: 12536978-12537684 Caenorhabditis elegans
Exon255854   98   X: 12537993-12538090 Caenorhabditis elegans
Exon255860   152   X: 12539443-12539594 Caenorhabditis elegans
Exon255866   118   X: 12539687-12539804 Caenorhabditis elegans
Exon255872   359   X: 12539860-12540218 Caenorhabditis elegans
Exon255878   120   X: 12540270-12540389 Caenorhabditis elegans
Exon255884   154   X: 12540438-12540591 Caenorhabditis elegans
Exon255890   98   X: 12540641-12540738 Caenorhabditis elegans
Exon255897   70   X: 12540790-12540859 Caenorhabditis elegans
Exon255900   133   X: 12551457-12551589 Caenorhabditis elegans
Exon255904   45   X: 12551640-12551684 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C16D6.2c.1 12536978 12551684 -1

1 Sequence

Length
2054

1 Sequence Ontology Term

Identifier Name Description
transcript