WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:R09A8.3.2 Sequence Name  R09A8.3.2
Length (nt)  3197   Chromosome Location  X: 12624665-12634354
Chromosome . Primary Identifier  X Chromosome Location . Start  12624665
Chromosome Location . End  12634354 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
R09A8.3.2

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006493 ivns-1 R09A8.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:R09A8.3 R09A8.3 2454   X: 12625241-12625359

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:R09A8.3.2 12624665 12634354 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon255922   695   X: 12624665-12625359 Caenorhabditis elegans
Exon255924   101   X: 12625408-12625508 Caenorhabditis elegans
Exon255926   916   X: 12625672-12626587 Caenorhabditis elegans
Exon255928   328   X: 12626702-12627029 Caenorhabditis elegans
Exon255930   144   X: 12627114-12627257 Caenorhabditis elegans
Exon255932   128   X: 12627452-12627579 Caenorhabditis elegans
Exon255934   125   X: 12627626-12627750 Caenorhabditis elegans
Exon255936   196   X: 12628078-12628273 Caenorhabditis elegans
Exon255938   166   X: 12628323-12628488 Caenorhabditis elegans
Exon255940   138   X: 12628652-12628789 Caenorhabditis elegans
Exon255942   160   X: 12628951-12629110 Caenorhabditis elegans
Exon255946   100   X: 12634255-12634354 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:R09A8.3.2 12624665 12634354 -1

1 Sequence

Length
3197

1 Sequence Ontology Term

Identifier Name Description
transcript