WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:R09A8.3.1 Sequence Name  R09A8.3.1
Length (nt)  3107   Chromosome Location  X: 12624655-12629110
Chromosome . Primary Identifier  X Chromosome Location . Start  12624655
Chromosome Location . End  12629110 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
R09A8.3.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006493 ivns-1 R09A8.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:R09A8.3 R09A8.3 2454   X: 12625241-12625359

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:R09A8.3.1 12624655 12629110 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon255982   705   X: 12624655-12625359 Caenorhabditis elegans
Exon255984   101   X: 12625408-12625508 Caenorhabditis elegans
Exon255986   916   X: 12625672-12626587 Caenorhabditis elegans
Exon255988   328   X: 12626702-12627029 Caenorhabditis elegans
Exon255990   144   X: 12627114-12627257 Caenorhabditis elegans
Exon255992   128   X: 12627452-12627579 Caenorhabditis elegans
Exon255994   125   X: 12627626-12627750 Caenorhabditis elegans
Exon255996   196   X: 12628078-12628273 Caenorhabditis elegans
Exon255998   166   X: 12628323-12628488 Caenorhabditis elegans
Exon256000   138   X: 12628652-12628789 Caenorhabditis elegans
Exon256002   160   X: 12628951-12629110 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:R09A8.3.1 12624655 12629110 -1

1 Sequence

Length
3107

1 Sequence Ontology Term

Identifier Name Description
transcript