WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:VF11C1L.1a.1 Sequence Name  VF11C1L.1a.1
Length (nt)  4849   Chromosome Location  X: 12968910-12975645
Chromosome . Primary Identifier  X Chromosome Location . Start  12968910
Chromosome Location . End  12975645 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
VF11C1L.1a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004089 ppk-3 VF11C1L.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:VF11C1L.1a VF11C1L.1a 4494   X: 12969263-12969424

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:VF11C1L.1a.1 12968910 12975645 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

14 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon256476   515   X: 12968910-12969424 Caenorhabditis elegans
Exon256478   253   X: 12969642-12969894 Caenorhabditis elegans
Exon256480   401   X: 12970057-12970457 Caenorhabditis elegans
Exon256482   735   X: 12970695-12971429 Caenorhabditis elegans
Exon256484   211   X: 12971588-12971798 Caenorhabditis elegans
Exon256486   636   X: 12971856-12972491 Caenorhabditis elegans
Exon256488   92   X: 12972809-12972900 Caenorhabditis elegans
Exon256490   495   X: 12972948-12973442 Caenorhabditis elegans
Exon256492   594   X: 12973602-12974195 Caenorhabditis elegans
Exon256494   269   X: 12974254-12974522 Caenorhabditis elegans
Exon256496   336   X: 12974714-12975049 Caenorhabditis elegans
Exon256498   114   X: 12975102-12975215 Caenorhabditis elegans
Exon256500   117   X: 12975390-12975506 Caenorhabditis elegans
Exon256503   81   X: 12975565-12975645 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:VF11C1L.1a.1 12968910 12975645 -1

1 Sequence

Length
4849

1 Sequence Ontology Term

Identifier Name Description
transcript