WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:VF11C1L.1a Sequence Name  VF11C1L.1a
Length (nt)  4494   Chromosome Location  X: 12969263-12969424
Chromosome . Primary Identifier  X Chromosome Location . Start  12969263
Chromosome Location . End  12969424
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
VF11C1L.1a

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE42575 PPK-3, isoform a 169.6 1497 Caenorhabditis elegans
 

Other

9 RNAi

WormBase ID
WBRNAi00001885
WBRNAi00054463
WBRNAi00010241
WBRNAi00019432
WBRNAi00036115
WBRNAi00099111
WBRNAi00087650
WBRNAi00078217
WBRNAi00098083

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:VF11C1L.1a 12969263 12969424 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004089 ppk-3 VF11C1L.1 Caenorhabditis elegans

14 Locations


Feature . Primary Identifier
Start End Strand
CDS:VF11C1L.1a 12969263 12969424 -1
CDS:VF11C1L.1a 12969642 12969894 -1
CDS:VF11C1L.1a 12970057 12970457 -1
CDS:VF11C1L.1a 12970695 12971429 -1
CDS:VF11C1L.1a 12971588 12971798 -1
CDS:VF11C1L.1a 12971856 12972491 -1
CDS:VF11C1L.1a 12972809 12972900 -1
CDS:VF11C1L.1a 12972948 12973442 -1
CDS:VF11C1L.1a 12973602 12974195 -1
CDS:VF11C1L.1a 12974254 12974522 -1
CDS:VF11C1L.1a 12974714 12975049 -1
CDS:VF11C1L.1a 12975102 12975215 -1
CDS:VF11C1L.1a 12975390 12975506 -1
CDS:VF11C1L.1a 12975565 12975643 -1

1 Sequence

Length
4494

1 Sequence Ontology Term

Identifier Name Description
CDS  

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:VF11C1L.1a.1 VF11C1L.1a.1 4849   X: 12968910-12975645