WormMine

WS296

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:VF11C1L.1b.1 Sequence Name  VF11C1L.1b.1
Length (nt)  4816   Chromosome Location  X: 12968950-12975643
Chromosome . Primary Identifier  X Chromosome Location . Start  12968950
Chromosome Location . End  12975643 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
VF11C1L.1b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004089 ppk-3 VF11C1L.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:VF11C1L.1b VF11C1L.1b 4503   X: 12969263-12969424

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:VF11C1L.1b.1 12968950 12975643 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

14 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon256504   475   X: 12968950-12969424 Caenorhabditis elegans
Exon256506   253   X: 12969642-12969894 Caenorhabditis elegans
Exon256508   401   X: 12970057-12970457 Caenorhabditis elegans
Exon256510   735   X: 12970695-12971429 Caenorhabditis elegans
Exon256512   211   X: 12971588-12971798 Caenorhabditis elegans
Exon256514   636   X: 12971856-12972491 Caenorhabditis elegans
Exon256516   92   X: 12972809-12972900 Caenorhabditis elegans
Exon256518   495   X: 12972948-12973442 Caenorhabditis elegans
Exon256520   594   X: 12973602-12974195 Caenorhabditis elegans
Exon256522   269   X: 12974254-12974522 Caenorhabditis elegans
Exon256524   336   X: 12974714-12975049 Caenorhabditis elegans
Exon256526   114   X: 12975102-12975215 Caenorhabditis elegans
Exon256528   126   X: 12975390-12975515 Caenorhabditis elegans
Exon256529   79   X: 12975565-12975643 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:VF11C1L.1b.1 12968950 12975643 -1

1 Sequence

Length
4816

1 Sequence Ontology Term

Identifier Name Description
transcript