WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F09A5.2b.1 Sequence Name  F09A5.2b.1
Length (nt)  2604   Chromosome Location  X: 13135107-13139532
Chromosome . Primary Identifier  X Chromosome Location . Start  13135107
Chromosome Location . End  13139532 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F09A5.2b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00008599 F09A5.2 F09A5.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F09A5.2b F09A5.2b 2604   X: 13135107-13135310

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:F09A5.2b.1 13135107 13139532 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

17 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon257026   204   X: 13135107-13135310 Caenorhabditis elegans
Exon257028   30   X: 13135357-13135386 Caenorhabditis elegans
Exon257030   36   X: 13135456-13135491 Caenorhabditis elegans
Exon257032   24   X: 13135541-13135564 Caenorhabditis elegans
Exon257034   88   X: 13135925-13136012 Caenorhabditis elegans
Exon257036   113   X: 13136304-13136416 Caenorhabditis elegans
Exon257038   90   X: 13136781-13136870 Caenorhabditis elegans
Exon257040   117   X: 13136914-13137030 Caenorhabditis elegans
Exon257042   193   X: 13137073-13137265 Caenorhabditis elegans
Exon257044   156   X: 13137315-13137470 Caenorhabditis elegans
Exon257045   235   X: 13137513-13137747 Caenorhabditis elegans
Exon257048   75   X: 13137797-13137871 Caenorhabditis elegans
Exon257050   391   X: 13137962-13138352 Caenorhabditis elegans
Exon257052   171   X: 13138490-13138660 Caenorhabditis elegans
Exon257054   266   X: 13138715-13138980 Caenorhabditis elegans
Exon257056   175   X: 13139037-13139211 Caenorhabditis elegans
Exon257057   240   X: 13139293-13139532 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:F09A5.2b.1 13135107 13139532 1

1 Sequence

Length
2604

1 Sequence Ontology Term

Identifier Name Description
transcript