WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F09A5.2a.1 Sequence Name  F09A5.2a.1
Length (nt)  2850   Chromosome Location  X: 13135107-13139787
Chromosome . Primary Identifier  X Chromosome Location . Start  13135107
Chromosome Location . End  13139787 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F09A5.2a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00008599 F09A5.2 F09A5.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F09A5.2a F09A5.2a 2595   X: 13135107-13135310

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:F09A5.2a.1 13135107 13139787 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

17 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon257025   204   X: 13135107-13135310 Caenorhabditis elegans
Exon257027   30   X: 13135357-13135386 Caenorhabditis elegans
Exon257029   36   X: 13135456-13135491 Caenorhabditis elegans
Exon257031   24   X: 13135541-13135564 Caenorhabditis elegans
Exon257033   88   X: 13135925-13136012 Caenorhabditis elegans
Exon257035   113   X: 13136304-13136416 Caenorhabditis elegans
Exon257037   90   X: 13136781-13136870 Caenorhabditis elegans
Exon257039   117   X: 13136914-13137030 Caenorhabditis elegans
Exon257041   193   X: 13137073-13137265 Caenorhabditis elegans
Exon257043   156   X: 13137315-13137470 Caenorhabditis elegans
Exon257046   226   X: 13137522-13137747 Caenorhabditis elegans
Exon257047   75   X: 13137797-13137871 Caenorhabditis elegans
Exon257049   391   X: 13137962-13138352 Caenorhabditis elegans
Exon257051   171   X: 13138490-13138660 Caenorhabditis elegans
Exon257053   266   X: 13138715-13138980 Caenorhabditis elegans
Exon257055   175   X: 13139037-13139211 Caenorhabditis elegans
Exon257058   495   X: 13139293-13139787 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:F09A5.2a.1 13135107 13139787 1

1 Sequence

Length
2850

1 Sequence Ontology Term

Identifier Name Description
transcript