WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:K09A11.5.1 Sequence Name  K09A11.5.1
Length (nt)  2061   Chromosome Location  X: 13275315-13278976
Chromosome . Primary Identifier  X Chromosome Location . Start  13275315
Chromosome Location . End  13278976 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
K09A11.5.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00010708 phf-33 K09A11.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:K09A11.5 K09A11.5 2061   X: 13275315-13275436

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:K09A11.5.1 13275315 13278976 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

14 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon257307   122   X: 13275315-13275436 Caenorhabditis elegans
Exon257308   284   X: 13275484-13275767 Caenorhabditis elegans
Exon257309   66   X: 13275926-13275991 Caenorhabditis elegans
Exon257310   101   X: 13276204-13276304 Caenorhabditis elegans
Exon257311   113   X: 13276402-13276514 Caenorhabditis elegans
Exon257312   339   X: 13276788-13277126 Caenorhabditis elegans
Exon257313   108   X: 13277193-13277300 Caenorhabditis elegans
Exon257314   96   X: 13277596-13277691 Caenorhabditis elegans
Exon257315   129   X: 13277785-13277913 Caenorhabditis elegans
Exon257316   95   X: 13277966-13278060 Caenorhabditis elegans
Exon257317   113   X: 13278110-13278222 Caenorhabditis elegans
Exon257318   324   X: 13278266-13278589 Caenorhabditis elegans
Exon257320   111   X: 13278759-13278869 Caenorhabditis elegans
Exon257321   60   X: 13278917-13278976 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:K09A11.5.1 13275315 13278976 -1

1 Sequence

Length
2061

1 Sequence Ontology Term

Identifier Name Description
transcript