WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F15A2.6b.1 Sequence Name  F15A2.6b.1
Length (nt)  3430   Chromosome Location  X: 13487552-13500668
Chromosome . Primary Identifier  X Chromosome Location . Start  13487552
Chromosome Location . End  13500668 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F15A2.6b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004719 sad-1 F15A2.6 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F15A2.6b F15A2.6b 2508   X: 13489453-13489466

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:F15A2.6b.1 13487552 13500668 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

17 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon257757   621   X: 13487552-13488172 Caenorhabditis elegans
Exon257761   166   X: 13488804-13488969 Caenorhabditis elegans
Exon257762   33   X: 13489434-13489466 Caenorhabditis elegans
Exon257764   82   X: 13489622-13489703 Caenorhabditis elegans
Exon257767   127   X: 13490196-13490322 Caenorhabditis elegans
Exon257769   152   X: 13490369-13490520 Caenorhabditis elegans
Exon257771   241   X: 13490584-13490824 Caenorhabditis elegans
Exon257773   263   X: 13491025-13491287 Caenorhabditis elegans
Exon257775   205   X: 13491334-13491538 Caenorhabditis elegans
Exon257777   360   X: 13491657-13492016 Caenorhabditis elegans
Exon257779   416   X: 13492119-13492534 Caenorhabditis elegans
Exon257781   151   X: 13492579-13492729 Caenorhabditis elegans
Exon257783   141   X: 13492784-13492924 Caenorhabditis elegans
Exon257785   86   X: 13493574-13493659 Caenorhabditis elegans
Exon257787   95   X: 13494385-13494479 Caenorhabditis elegans
Exon257789   157   X: 13494739-13494895 Caenorhabditis elegans
Exon257792   134   X: 13500535-13500668 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:F15A2.6b.1 13487552 13500668 -1

1 Sequence

Length
3430

1 Sequence Ontology Term

Identifier Name Description
transcript