WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F15A2.6a.1 Sequence Name  F15A2.6a.1
Length (nt)  3388   Chromosome Location  X: 13487555-13500662
Chromosome . Primary Identifier  X Chromosome Location . Start  13487555
Chromosome Location . End  13500662 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F15A2.6a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004719 sad-1 F15A2.6 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F15A2.6a F15A2.6a 2745   X: 13488088-13488172

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:F15A2.6a.1 13487555 13500662 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

16 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon257758   618   X: 13487555-13488172 Caenorhabditis elegans
Exon257760   166   X: 13488804-13488969 Caenorhabditis elegans
Exon257763   82   X: 13489622-13489703 Caenorhabditis elegans
Exon257766   127   X: 13490196-13490322 Caenorhabditis elegans
Exon257768   152   X: 13490369-13490520 Caenorhabditis elegans
Exon257770   241   X: 13490584-13490824 Caenorhabditis elegans
Exon257772   263   X: 13491025-13491287 Caenorhabditis elegans
Exon257774   205   X: 13491334-13491538 Caenorhabditis elegans
Exon257776   360   X: 13491657-13492016 Caenorhabditis elegans
Exon257778   416   X: 13492119-13492534 Caenorhabditis elegans
Exon257780   151   X: 13492579-13492729 Caenorhabditis elegans
Exon257782   141   X: 13492784-13492924 Caenorhabditis elegans
Exon257784   86   X: 13493574-13493659 Caenorhabditis elegans
Exon257786   95   X: 13494385-13494479 Caenorhabditis elegans
Exon257788   157   X: 13494739-13494895 Caenorhabditis elegans
Exon257791   128   X: 13500535-13500662 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:F15A2.6a.1 13487555 13500662 -1

1 Sequence

Length
3388

1 Sequence Ontology Term

Identifier Name Description
transcript