WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C40C9.5b.1 Sequence Name  C40C9.5b.1
Length (nt)  2776   Chromosome Location  X: 13625373-13631166
Chromosome . Primary Identifier  X Chromosome Location . Start  13625373
Chromosome Location . End  13631166 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C40C9.5b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006412 nlg-1 C40C9.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C40C9.5b C40C9.5b 2388   X: 13625690-13625735

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C40C9.5b.1 13625373 13631166 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

15 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon257956   363   X: 13625373-13625735 Caenorhabditis elegans
Exon257965   110   X: 13625788-13625897 Caenorhabditis elegans
Exon257975   105   X: 13626916-13627020 Caenorhabditis elegans
Exon257983   143   X: 13627183-13627325 Caenorhabditis elegans
Exon257992   261   X: 13627816-13628076 Caenorhabditis elegans
Exon258001   326   X: 13628141-13628466 Caenorhabditis elegans
Exon258010   128   X: 13628518-13628645 Caenorhabditis elegans
Exon258021   252   X: 13628809-13629060 Caenorhabditis elegans
Exon258028   156   X: 13629342-13629497 Caenorhabditis elegans
Exon258035   170   X: 13629607-13629776 Caenorhabditis elegans
Exon258042   132   X: 13630061-13630192 Caenorhabditis elegans
Exon258049   266   X: 13630241-13630506 Caenorhabditis elegans
Exon258056   113   X: 13630560-13630672 Caenorhabditis elegans
Exon258063   133   X: 13630820-13630952 Caenorhabditis elegans
Exon258074   118   X: 13631049-13631166 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C40C9.5b.1 13625373 13631166 -1

1 Sequence

Length
2776

1 Sequence Ontology Term

Identifier Name Description
transcript