WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C40C9.5a.1 Sequence Name  C40C9.5a.1
Length (nt)  2739   Chromosome Location  X: 13625419-13631166
Chromosome . Primary Identifier  X Chromosome Location . Start  13625419
Chromosome Location . End  13631166 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C40C9.5a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006412 nlg-1 C40C9.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C40C9.5a C40C9.5a 2397   X: 13625690-13625744

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C40C9.5a.1 13625419 13631166 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

15 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon257957   326   X: 13625419-13625744 Caenorhabditis elegans
Exon257964   110   X: 13625788-13625897 Caenorhabditis elegans
Exon257974   105   X: 13626916-13627020 Caenorhabditis elegans
Exon257982   143   X: 13627183-13627325 Caenorhabditis elegans
Exon257991   261   X: 13627816-13628076 Caenorhabditis elegans
Exon258000   326   X: 13628141-13628466 Caenorhabditis elegans
Exon258009   128   X: 13628518-13628645 Caenorhabditis elegans
Exon258020   252   X: 13628809-13629060 Caenorhabditis elegans
Exon258027   156   X: 13629342-13629497 Caenorhabditis elegans
Exon258034   170   X: 13629607-13629776 Caenorhabditis elegans
Exon258041   132   X: 13630061-13630192 Caenorhabditis elegans
Exon258048   266   X: 13630241-13630506 Caenorhabditis elegans
Exon258055   113   X: 13630560-13630672 Caenorhabditis elegans
Exon258062   133   X: 13630820-13630952 Caenorhabditis elegans
Exon258073   118   X: 13631049-13631166 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C40C9.5a.1 13625419 13631166 -1

1 Sequence

Length
2739

1 Sequence Ontology Term

Identifier Name Description
transcript