WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C40C9.5d.1 Sequence Name  C40C9.5d.1
Length (nt)  2626   Chromosome Location  X: 13625433-13631172
Chromosome . Primary Identifier  X Chromosome Location . Start  13625433
Chromosome Location . End  13631172 Method  Coding_transcript
Quick Links:
 
Quick Links:
 

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C40C9.5d.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006412 nlg-1 C40C9.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C40C9.5d C40C9.5d 2292   X: 13625690-13625744

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C40C9.5d.1 13625433 13631172 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

14 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon257958   312   X: 13625433-13625744 Caenorhabditis elegans
Exon257966   110   X: 13625788-13625897 Caenorhabditis elegans
Exon257985   143   X: 13627183-13627325 Caenorhabditis elegans
Exon257994   261   X: 13627816-13628076 Caenorhabditis elegans
Exon258003   326   X: 13628141-13628466 Caenorhabditis elegans
Exon258012   128   X: 13628518-13628645 Caenorhabditis elegans
Exon258023   252   X: 13628809-13629060 Caenorhabditis elegans
Exon258030   156   X: 13629342-13629497 Caenorhabditis elegans
Exon258037   170   X: 13629607-13629776 Caenorhabditis elegans
Exon258044   132   X: 13630061-13630192 Caenorhabditis elegans
Exon258050   266   X: 13630241-13630506 Caenorhabditis elegans
Exon258058   113   X: 13630560-13630672 Caenorhabditis elegans
Exon258065   133   X: 13630820-13630952 Caenorhabditis elegans
Exon258075   124   X: 13631049-13631172 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C40C9.5d.1 13625433 13631172 -1

1 Sequence

Length
2626

1 Sequence Ontology Term

Identifier Name Description
transcript